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Most likely baytril, but there are other options. Most of the time I have had to do ear drops, but oral medicine may be possible too.

There is a book called Exotic Animal Formulary. Its a medical book of various medications and how to dose them and it includes a section on hedgehogs. I have a copy of it and take it with me to offer to vets who have no experience before.

In case you haven't run across it, there are a few posts here describing ear infections, this one has lots of information in it please help. blood near ear.
 
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